PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0025s0470.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 429aa    MW: 48454.1 Da    PI: 5.6964
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0025s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.39.8e-27159223170
                 E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                             r+++sL+llt+kf+kl++++++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wk
  SapurV1A.0025s0470.1.p 159 RYDSSLGLLTKKFVKLIQEAQDGTLDLNKTAEML---EV--QKRRIYDITNVLEGIGLIEKTSKNHIHWK 223
                             6899******************************...99..****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-27156223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-34159224IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.98E-18159222IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.9E-25161223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440744.97E-26237339No hitNo description
CDDcd146604.20E-36239339No hitNo description
PfamPF164212.5E-23241337IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MANASEDPTR TINPSQFHFQ LLHSHSHFQN QNLCSLNNPP PSNRLFPSSF RKPHHLPPPP  60
PDNNNTPLGF QFHSSNTHSA FRDVALEMKS ESDDHEVRAT RDAAFPAQSD IVTDLTLAPR  120
SSFGGKHKNK SRVPKHAKSV TQRLNAESHN GLNLASGCRY DSSLGLLTKK FVKLIQEAQD  180
GTLDLNKTAE MLEVQKRRIY DITNVLEGIG LIEKTSKNHI HWKKEFDDCE QKMLDDHARI  240
KAEVESLYTE EYRLEESIRD RQELLRGLKE DAVRRKHLFL TEEDITSLPC FQNQMLFAIK  300
APEASYLEVP DPDEDIGSPL YKMTVRSTNG PIDVYLLSKC KQGEDVTVEH VEPTETSSWN  360
SSQCREQDAG LTSECRGDQN SCEPFSSLTL EASGICKLIP ADCNIIDDYW FTTDDSVSIS  420
KLWVDRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-23159223772PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300712.10.0E2F transcription factor-2 family protein
TrEMBLB9GQW10.0B9GQW1_POPTR; E2F transcription factor-2 family protein
STRINGPOPTR_0002s02500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-88E2F/DP family protein